SNP Profiles of UF 668 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
1._UF_668	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
2._UF_668	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
3._UF_668	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
4._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
5._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
6._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
7._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
8._UF_668	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	_	CT
9._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	_	CT
10._UF_668	GG	AT	AC	GT	CT	AC	_	AG	CT	AT	GG	_	CC	CT
11._UF_668	GG	AT	AC	GT	CT	AC	_	AG	CT	AT	GG	_	CC	CT
12._UF_668	GG	AT	AC	GT	_	AC	_	AG	CT	_	GG	_	CC	CT
13._UF_668	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
14._UF_668_Fld#_118_Plt#_6	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	_	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
1._UF_668	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
2._UF_668	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
3._UF_668	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
4._GC-01-077-4-13	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
5._GC-01-077-4-13	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
6._GC-01-077-4-13	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
7._GC-01-077-4-13	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
8._UF_668	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
9._GC-01-077-4-13	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
10._UF_668	_	CC	AC	CT	AG	GT	CG	CC	TT	GG	_	CT	_	_
11._UF_668	_	CC	AC	CT	AG	GT	CG	CC	TT	GG	_	CT	_	_
12._UF_668	_	CC	_	CT	AG	GT	CG	CC	TT	GG	_	CT	_	_
13._UF_668	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
14._UF_668_Fld#_118_Plt#_6	AC	CC	AC	AG	_	AC	CG	GG	AA	GG	AA	AG	AG	AG

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
1._UF_668	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
2._UF_668	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
3._UF_668	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
4._GC-01-077-4-13	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
5._GC-01-077-4-13	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
6._GC-01-077-4-13	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
7._GC-01-077-4-13	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
8._UF_668	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
9._GC-01-077-4-13	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
10._UF_668	AA	AA	_	CT	GT	CC	AA	TT	CT	CG	AG	_	X_X	X_X
11._UF_668	AA	AA	_	CT	GT	CC	AA	TT	CT	CG	AG	_	X_X	X_X
12._UF_668	AA	AA	_	CT	GT	CC	AA	TT	CT	CG	_	_	X_X	X_X
13._UF_668	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
14._UF_668_Fld#_118_Plt#_6	AA	AA	_	_	AA	GG	AA	AA	AG	CG	AG	AG	X_X	X_X

Input profile: UF_668

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Mars Center for Cocoa Science, Brazil

Location: 1413 13

Dapeng Zhang, 2016

1._UF_668

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1413 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._UF_668

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1413 16 > F

Dapeng Zhang, 2016

3._UF_668

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1413 5 > FP

Dapeng Zhang, 2016

4._UF_668 GC-01-077-4-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

5._UF_668 GC-01-077-4-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._UF_668 GC-01-077-4-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

7._UF_668 GC-01-077-4-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16 > FP4

8._UF_668

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1413 7 > FP

Dapeng Zhang, 2016

9._UF_668 GC-01-077-4-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

10._UF_668

98.4 %
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

11._UF_668

98.4 %
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

12._UF_668

98.2 %
28 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 8 Row 27 31_33

Dapeng Zhang, 2016

13._UF_668

97.5 %
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

14._UF_668 UF_668_Fld#_118_Plt#_6

57.1 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 118, Tree: 6

Notes: TARS_Cacao_collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520